If you already have the F/IC, then the rest of this does not matter unless you just feel the need to run the stand-a-lone. The F/IC can handle the fuel and ignitions changes needed on a daily bases reguardless of the IAT's you would just need to setup two tunes based on using meth or not using meth. The F/IC supports dual tunes and can be triggered to run either based on the condition of the meth system so all you would need is the F/IC. In theory the F/IC could also be used to control the IAT min temp voltage sent to the OEM ECU and lock the timing at that temp. It can do all of this and retain the OBDII plug in test as long as the tune on the F/IC is good. The stand-a-lone will require a plan such as you have laid out to get around the emmision issues of the plug in OBDII testing, but if the car is setup on the F/IC and tuned correctly then with the power level of a stock CTSC or even a CTSC HiBoost setup can be handled by the F/IC and OEM ECU combination.
I think most of the other questions related to the proposed device to clamp the IAT sensor is geared towards guys that want to cool the charge temps with meth, and retain the CTSC fuel system as designed by CT. Once you decide to go with the F/IC or the standalone ECU I do not think such a device will be needed.
If you go with the F/IC you will have the control needed to deal with the IAT's and the Meth plus you can pass the OBDII testing.
If you go the stand-a-lone route you get complete contol of the engine and you have to come up with a plan to make it pass the emmisions testing as the OEM ECU is not used to manage the fuel and timing any more and the OBDII port is dead. By the way if you did follow your plan you can leave the widebands in place and simply wire the O2 sensor inputs at the ECU to a switch, the switch would be used to change the input at the ECU between the wideband output and the narrow band output of your wideband controller, most if not all wideband controllers have both of these outputs for just this reason, they can output both a narrow band and wideband signal at the same time, you just flip a switch to patch in the output desired.
Dave