I discussed this with au-nsx on another thread. The reason is that the SC is running low boost. If you turbocharge at the same boost levels, no need for lower compression. But you are defeating the benefits of a turbo. A turbo can easily give you MEGA amounts of boost, more so than a supercharger (the relavent superchargers being discussed for our application). So to gain the benfits, you need to lower the compression.
If you are going to run low boost, a SC is a better device, especially one like the Comptech Autorotor as its intake air temps are cool. Because of the nature of a turbo, intake air temps are high. You have an impeller spinning at higher speeds and the turbo itself heats up as exhaust gases are passing on the turbine side. This raises the air temps, and therefore, without an intercooler, provides less power at the same boost levels. Air pressure may be just as high, but the heated gas is packing less oxygen molecules in the same space.
If you had a low boost turbo setup that magically provided the same temps at output as a low boost supercharger, the turbocharged motor would probably provide more power because it has less parasitic drag on the motor. But its power "curve" would still be different. More up top, a bit less down low.
So the conclusion is that for a low boost non-intercooled application the autorotor just works a lot better than a turbo would. When you want to produce 500HP, and are willing to intercool and all that jazz that goes along with it, then its better to use a well sized turbo and reduce the factory compression ratio so you don't blow it all to pieces.