I hope not. That would be a great injustice to Kimi, who by all measures deserves it more than Lewis.
The way Ferrari went after McLaren this year with this so called "spy" scandle was completely out of line, and FIA ruled in their favor by punishing McLaren with record penalty, even though McLaren did not use Ferrari design. Spying on other team is normal under F1, McLaren just happened to received the information on a silver platter without having to do much work. They didn't ask for the information. In fact, Stepneygate wasn't even panalized even though he was under Ferrari watch. FIA often ruled in favor of Ferrari and the history shows it. Conspiracy theory is only a theory until it is proven true, but the chance of the whole drama set up by Ferrari is a complete real scenario. It is a stereo type to make fun of an Italian team run by a French guy and a british national was used as a scapegoat...
Don't forget, even Honda did some thing questionable back in the early 80's when they had problems with the turbo engines (they blow up); it wasn't until Honda received an actual valve from Tag motor when they started to have reliability. Therefore, Honda should have been stripped all of their points during that era.
If FIA deduct the points from William and BMW for their violation, and give Hamilton the Championship, it is justified. I think it is a perfect example of poetic justice. Ferrari is a strong team, but they are no saints. They often play dirty and have violated rules just as much as other teams. It would be funny to see Ferrari loose the driver's championship because of other "none" involved teams. You know they would have ask for the same if the scenario is reversed. We all know the phrase "You are guilty only if you get caught," and Ferrari don't always get caught till distance future after the fact.
This is a team sports that involves machinary, and championship is related to technical part of the sports, who ever gets the best car wins, and in this case, both drivers has the best car, period.
Either way, both drivers fought hard and who ever gets the crownd will be good for the sports. It is always good to see a new champ.