Thanks Joe, this is really helpful info. Yes, I have adjustable coilovers. I want to lower my car by 19mm all around (NSX-R spec, as I have those spring rates), and then adjust only slightly for corner balance. I just was not sure from where I should start. Given your explanation, I think it is best to use the F 180mm and R 223mm spec suspension heights, as these would correspond to the brand new springs and brand new tires condition (which I have). My 19mm drop would therefore yield F 161mm and R 204 mm.
After researching various other threads and the wiki by people who do set up the car for track duty, the consensus appears to be:
1. Set ride height empty car
2. Corner balance with driver in car
3. Align empty car to desired spec
The only discrepancy I found was this statement in the wiki by Prime members [MS], [HS], [KJ]:
Now for the critical advice. Have your car aligned with you in the car! If they have rules about customers in the shop, make sure they put your weight in the driver's seat. I tried it both ways and found a significant difference in specs, to the tune of more than half a degree in camber and 3mm toe.
This made me hesitate- I would hate to spend all this time and money getting the car corner balanced and aligned, only to have everything thrown off the minute I sit in the car! In that case, I might as well just set the ride height equal and align it empty. I just want to make sure I'm doing this the right way the first time. This is my first experience with a height adjustable suspension.