I believe there is an issue with the throttle bodies, in 99 it is throttle by wire in 91 it is mechanical/cable connection. I suspect that you will need to change to the older throttle body to retain your current ECU.
I have considered this swap myself and started doing the planning for it. While gathering parts I came across a very good deal on a 3.0 and decided to build that engine instead. I do have a lot of information about doing the swap if you have any specific questions, feel free to call at 312-719-7233.
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