Building a 6-speed from scratch.

Joined
30 October 2016
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Location
Austin, TX
A few years ago @Honcho sent me an article in Japanese talking about converting a 5 speed transmission to a 6 speed while reusing some parts such as the bell housing and diff and replacing everything else. I started down that path, then after ordering a bunch of the parts, realized that it would actually be way cheaper to just build a 6 speed from scratch and sell the original R spec 5 speed afterwards. (but lets be real it will just end up mothballed in storage somewhere since I'm a NSX parts hoarder at this point)

The nice thing about a from-scratch build is you can spec out everything to your own preferences, and the cost is actually about the same as just buying a used one, once you wade through the parts lead times and availability issues, and quality issues... I first started ordering parts more than 2 years ago and just now am finally getting all of them, T3 makes a few aftermarket replacements so I could have put it together earlier I'm just lazy.

The late year transmissions came with double cone synchronizers on every gear, so I went with that gear set. I also opted for the factory 4.23 Type R final drive since my car is mostly street driven and I don't see a compelling reason to go for one of the higher ratio more exotic options, and the Type R input shaft for clutch compatibility reasons. For the diff, I started off just sourcing a used diff and converting it to R spec, then ended up selling it here and buying a Wavetrac after @RYU twisted my arm and threatened my family if I didn't agree to it. (he actually just told me it was better)

I was going to just put it all together as Honda intended, then decided that if I'm going to be shoveling money into the fire I might as well toss in a little more and went all in on the surface treatments more as an experiment than anything else. I had the entire gear set and final drive REM polished by New England Gear Polishing, then WPC treated. Then most of the rest of the internal parts I had just WPC'd including oil pump gear, shifter mechanisms, shift forks, etc. Total cost for surface treatments was around $1500 not including shipping oddly shaped chunks of iron across the country multiple times which was probably another $500 on top of that. I sent the parts out in original Honda packaging and received them back in exactly the same way, both NEGP and WPC had quick turnaround times and were very organized so no complaints there.

Its important to note that I did not WPC treat the synchronizers. I was thinking about it and ended up calling Synchrotech first to get their thoughts, since they seem to be the experts on aftermarket Honda transmission development, and they said that they love WPC for gear sets but absolutely do not do it on the synchronizers. Which makes perfect sense to me, the synchros and cone surfaces are specifically engineered to interact with each other in a specific way, and WPC could interfere with that. If not at first, potentially down the road and the last thing I want to do is end up with a grinding 3rd gear or something. The nice thing about the double cone synchros is they are completely separate from the gears, so the gears can be polished and treated without touching the synchronizers at all.

I also didn't treat the ball or needle bearings, because that just seemed pointless.

Cleaning

Run everything that was polished or treated through the ultrasonic cleaner, dry everything, and oil lightly with WD40 to prevent rust. Keep in mind that WD40 is not acceptable for long term storage rust protection, but in the short term works great. Several of the shafts are hollow as well, such as the mainshaft, countershaft, and 5/6 synchro shaft and need to be thoroughly flushed out since I saw trace amounts of blasting media still inside them from the WPC process when I got the parts back.

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Shift Forks (and discover that I forgot to have some parts treated)

The 5/6 fork is welded, but the 1/2 and 2/3 forks (shown here) have these very tight double spring pins, presumably for serviceability so the fork can be replaced without the whole shaft? First you put in the big spring pin, then once it's in, you drive a smaller spring pin through the middle of it. The vice with my DIY aluminum L bracket soft jaws works pretty well for this, then I used a punch and a hammer to push it in the last few millimeters that the vice couldn't get just by resting the fork across my legs to support it. The black marks on the shaft are sharpie marks to help line the hole for the pin up.

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I forgot to have the parts that bolt onto the 5/6 fork treated so those are sent off and should be back in a few days, and fortunately they aren't blocking any progress until final assembly.

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Main Shifter Assembly

This is what physically engages with the shift forks to push them up or down to select each gear. The shaft, arm thingy, and the sideways U shaped part were treated, but the big plate on the bottom was not as it has that roller and I didn't want to risk it getting jammed up with blasting media. I was expecting this to be more difficult to assemble than it was.

When I sent the sideways U shaped thing off for treatment it was still sealed in the Honda bag so I didn't realize that it had a little rubber bumper on it to pad swinging the shifter left to right, and underneath the rubber bumper ring had started to develop surface rust presumably due to moisture being trapped after the part was cleaned so make sure not to make that mistake. Shouldn't hurt anything though.

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Reverse Shaft

This is why it is absolutely critical to inspect all parts and try to feel how they interact. This tiny tiny bur was on the reverse gear cone where the synchronizer sits. You can just barely feel it with a fingernail, and I missed it the first few times when I was looking for it. The only indication was that the synchronizer would stick and drag terribly when trying to rotate it without pressure on the cone. The steel this gear is made out of is rather hard so a file wouldn't really even touch it, I had to use a find sandpaper roll on the dremel which cleaned it up nicely, then another trip through the ultrasonic cleaner.

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This brings us to the odd point that NSX transmissions have synchronized reverse gears, contrary to nearly every other Honda gearbox (and other manufacturers). Compared to something like a D, B, or K series gearbox where the reverse gear is pushed down between the mainshaft and countershaft by a little hand as seen here. It always seemed to me since this could just result in more parasitic drag since the gears are always engaged but I guess it is negligible.

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Reverse gear stack and tiny little shift fork done.

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awesome work as always,

could you give us the parts list of what you needed to build it from scratch? would be an amazing resource to have!
 
Thats a good idea. I don't even have an organized list, correct, I've ended up with doubles of a few things and missing bits so it would be good to compile a list as it goes together so we know what all is needed.

Parts List (WIP - incomplete!)

Part NumberQuantityDescription
Reverse Gear Shaft
23261-PR8-F001Shaft
23926-PY5-0001Spring washer
23546-PY5-0002Thrust washer
91132-PY5-0084Thrust bearing
91106-PY5-0082Needle bearing
23541-PR8-F001Gear
23916-PR8-F001Gear spacer
23642-PR8-010144mm synchro
23651-PB6-960144mm synchro spring
23627-PR8-F001Gear/sleeve set
Main Gear Shaft
23210-PR8-N001Main shaft (Type R - long spline)
23210-PR8-F001Main shaft (standard)
23441-PR8-F0013rd gear (double cone synchro)
91104-PR8-F0113rd gear needle bearing
23621-PR8-F0013-4 hub/sleeve
23451-PR8-F0014th gear (double cone synchro)
23915-PR8-F0014th and 5th inner race
23581-PR8-J0015th gear (double cone synchro)
23624-PR8-J0015-6 hub/sleeve
23591-PR8-J0016th gear (double cone synchro)
91109-PR8-F0116th gear needle bearing
23914-PR8-F0016th gear inner race
91107-PR8-F012Needle bearing (4th and 5th)
23649-PW8-0104Main shaft synchro sets (double cone)
91004-PR8-0081Main shaft top bearing
Counter Gear Shaft
23220-PR8-T001Counter shaft (4.23 FD)
23220-PR8-F001Counter shaft (4.06 FD)
41233-PR8-J001Ring gear (4.23 FD old style) *
41233-PR8-0001Ring gear (4.06 FD old style) *
41233-PR8-F001Ring gear (4.06 FD new style) *
23741-PR8-F001Reverse gear / 1st gear inner race
23921-PR8-F0011st gear clearance shim A **
23922-PR8-F0011st gear clearance shim B **
23923-PR8-F0011st gear clearance shim C **
23924-PR8-F0011st gear clearance shim D **
23925-PR8-F0011st gear clearance shim E **
91105-PR8-F0111st gear needle bearing
23420-PR8-F0011st gear
23619-PR8-F0011-2 hub/sleeve
23912-PR8-F0012nd gear inner race A **
23913-PR8-F0012nd gear inner race B **
91108-PR8-F0112nd gear needle bearing
23431-PR8-F0012nd gear
23471-PR8-F0013rd gear
23481-PR8-F0014th gear
23461-PR8-F0015th gear
23491-PR8-F0016th gear
91102-PR8-0181Counter shaft needle bearing
91003-PR8-0081Counter shaft ball bearing w/snap ring groove
90602-PR8-0001Snap ring
23926-PR8-F001Counter shaft top washer
90201-PR8-0001Counter shaft top nut
23646-PR8-0202Counter shaft synchro sets (double cone)
Shift Forks
24281-PR8-F001Reverse fork shaft
24241-PR8-0001Reverse fork
24261-PR8-01011-2 fork shaft
24221-PR8-F0011-2 fork
24251-PR8-F0013-4 fork shaft
24211-PR8-00013-4 fork
24130-PR8-F0015-6 fork/shaft
24242-PR8-F0015-6 shaft part A
24243-PR8-F0015-6 shaft part B
90029-PR8-00015-6 shaft special bolt
90412-679-00015-6 shaft washer
94305-5025235x25 spring pin
94305-3025233x25 spring pin
Shifter Mechanism
24351-PR8-F001Shaft
24440-PR8-F001The thing that pushes the forks up and down
24432-PR8-F001Holder for the thing
24446-PR8-F001Shifter mechanism base
24464-PR8-F001Shifter centering spring
90403-689-0001Shaft retaining ring
94305-3016213x16 spring pin
90028-PB6-0103Shifter mech mounting bolts
Clutch Housing
21000-PR8-0201Bell housing
21105-PR8-0001Differential oil guide thing
91206-PR8-0051Right side axle seal
90705-PG2-0004Transmission case dowel pins
21171-PR8-0071Oil pump inner rotor
21172-PR8-0071Oil pump outer rotor
24457-PR8-0001Oil pump pressure relief spring
96211-100001Oil pump pressure relief ball
21176-PR8-0001Oil pump cover plate DISCONTINUED ***
95701-060-16083Oil pump cover plate bolts
91216-PR8-0051Input shaft seal
23927-PR8-0001Input shaft spring washer
91002-PR8-0081Input shaft bearing
21101-PR8-0001CS bearing retainer DISCONTINUED ****
90030-PG2-0002CS bearing retainer bolts

* The NSX came with 2 types of differentials/ring gears. "Old style" means the 91-94 diff, all Type R differentials, and Wavetrac differentials. "New style" refers to the 95-05 differential found in NON-TYPE R cars. Differential and ring gear type must match!

** There are multiple thicknesses/sizes of these parts. They are cheap-ish so just order all of them.

*** T3TEC makes a replacement for this part, or you can make your own using 1/8" aluminum plate and this diagram. Huge thank you to the guys working on the LochNSX for providing an oil pump plate to measure off of.

oil_pump_plate.jpg

**** This little metal plate has apparently been discontinued, but I'll take measurements of mine and add them here so it can be fabricated.

***** This oil guide plate is currently marked as discontinued. I was able to get it from Acura USA since apparently they had a few kicking around.
 
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Parts List Continued (WIP - incomplete!)

Part NumberQuantityDescription
Clutch Housing (Continued)
21120-PG2-0031Sump magnet
91103-PR8-0181CS bearing
21104-PR8-0001CS oil guide plate DISCONTINUED *
91215-PR8-0052Shift arm oil seal
94301-102001Bell housing dowel A
94301-142001Bell housing dowel B
21109-PR8-0001Magnetic pickup plug **
91309-PX4-0031Magnetic pickup plug O-ring **
23813-PL4-0001Magnetic pickup plug retainer **
95701-060-16081Magnetic pickup plug bolt **
Transmission Case
21200-PR8-F011Transmission case
35600-PR8-0031Reverse switch
32745-PR8-0001Reverse switch plug bracket
35620-PR8-0031Neutral switch
32747-PR8-0001Neutral switch wire bracket
95701-060-12081Neutral switch wire bracket bolt
28250-PR8-0031Reverse lockout solenoid
24523-PY5-F001Reverse lockout spring
24522-PR8-F001Reverse lockout pin small
24520-PR8-F001Reverse lockout pin large
95701-060-25082Reverse lockout bolts
32749-PR8-F001Reverse lockout wire bracket
21180-PR8-0161Oil strainer
21181-PR8-0001Oil strainer spring
91307-PR8-0051Oil strainer O-ring
21261-PR8-0001Oil strainer cover plate
95701-060-16081Oil strainer cover plate bolt
90081-PB6-0001Drain plug
94109-140002Drain plug crush washer ***
92800-200001Fill plug
94109-200002Fill plug crush washer ***
91207-PR8-0051Left side axle seal
90082-PY5-0001Snap ring cover bolt
24519-PB6-0003Detent bolt A
24452-PB6-0203Detent bolt spring A
96211-100003Detent bolt ball A
24519-PG2-0001Detent bolt B
24452-PR8-0001Detent bolt spring B
96211-120001Detent bolt ball B
23931-PR8-F001Mainshaft shims (23931 - 23951) ****
21104-PX5-0101Mainshaft oil guide plate
90013-PG1-01012Case bolts
90013-PG2-0004Case bolts (long, for dowel pin locations)
21232-PR8-0001Transmission hanger A (D/C buy from T3TEC)
90024-612-0001Sealing bolt
90471-580-0001Sealing bolt crush washer
21233-PR8-0001Transmission hanger B
95701-080-20084Transmission hanger A/B bolts
32746-PR8-0001Neutral wire bracket
32748-PR8-F001Bracket
21106-PR8-0001Breather plate
92101-060-120A1Breather plate bolt
32754-PR7-A001Bracket
Clutch Release
22841-PR8-0101Clutch fork boot
21102-PR8-0101Throwout bearing guide
21107-PR8-0001Throwout bearing guide shroud thing
95701-060-16081Throwout bearing guide bolts
22810-PR8-0031Throwout bearing
22825-PR8-0001Clutch fork hinge
22835-PR8-0001Clutch fork spring
90031-PR8-0002Clutch fork hinge bolts
22820-PR8-0001Clutch fork
Shift Linkage
24460-PR8-0001Selector lever (bell housing)
24481-PR8-F001Selecter lever internal (bell housing)
24470-PR8-0001Selector lever (case)
24411-PR8-F001Selector lever internal (case)
90029-PG2-0102Selector lever bolt
90412-679-0002Selector lever washer
24450-PR8-0001Selector lever roller detent (case)
24454-PR8-0001Selector lever roller detent support (case)
90031-PR8-0001Selector lever roller detent bolt (case)
24230-PR8-0001Reverse selector lever
90028-PB6-0103Reverse selector lever bolts
21361-PR8-0001Shift cable cover (top)
21360-PR8-0001Shift cable cover (bottom)
93404-060-16083Shift cable cover bolts
24600-PR8-0001Shift cable mounting bracket
95801-080-28083Shift cable mounting bracket bolts
21365-PR8-0001Shift cable grommet
Differential*****
90017-PR8-00012Differential Case Bolts
91121-PR8-0081Clutch housing diff bearing
41380-PR8-0001Clutch housing diff washer
91122-PR8-0081Case diff bearing
41481-PR8-00020Case diff shims****
41310-PR8-0001Differential case half (includes speedo drive)

* This oil guide plate is currently marked as discontinued. I was able to get it from Acura USA since apparently they had a few kicking around.

** I believe this sensor is only used on cars with power steering, and PS won't work with anything but a 4.06 FD? The parts listed in this diagram for for the blockoff plug not the actual sensor.

*** 2 crush washers so you can drain/refill after break in.

**** There is like 20 different shims here, good luck. You can cut your own shims out of shim stock for minor adjustments as an alternate option.

***** This is not a complete list of differential parts. There is no reason to build an OEM diff from brand new parts. Either find a used diff and rebuild it for a couple hundred bucks or buy a Wavetrac since thats what you'd spend building an OEM diff. Also the only way to get a speedo drive gear is to buy the whole case half which is like $250.
 
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I added the image with the measurements, somehow it got removed previously. Good to know about the T3 replacement for that oil plate as well. I somehow ended up with 2 spares for 21104-PX5-010 if anyone ends up trying a build like this and has trouble getting ahold of them.

I also discovered that I forgot to buy a set of ring gear bolts for the Wavetrac, and forgot to buy a cover plate for the oil strainer as well.

Main Shaft

My favorite part of putting transmissions together is assembling the shafts, so many parts that all fit together perfectly. I like to clamp the bottom in a vice with soft jaws to hold everything during assembly.

These are pretty straightforward, just stack all the parts in the right order according to the FSM and check gear clearances as with feeler gauges. From the manual, it seems like a press *should* be needed to install the hubs on the main shaft, but in my case they ended up being a tight clearance fit and I was able to get them to go on with just my thumbs, so I suspect the REM polishing might have affected clearances a tiny bit but nothing is concerningly loose.

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The countershaft is more of the same, but it has a few shim selections to make. There are 5 sizes of shim to go under 1st gear to set the clearance and I bought all of them since they only cost a couple bucks, and ended up needing the 2nd thinnest one to hit the target of 0.002-0.004".

The 2nd gear clearance has the same range but the clearance is set with metal collars instead of shim washers, there are only 2 size options, and the best I could do was 0.0045" or so. The 0.005" feeler wouldn't fit but the 0.004" didn't really drag, I weighed my options here and decided running it a tiny bit too loose would be preferable to trying to modify the collar. (seen off to the right in the photo)

IMG_2569.jpg

The 3,4,5,6 gears which I was expecting to need a press for also went on by hand with a little bit of effort, then I torqued the top nut to 83lbft, removed it, torqued again to 83 and staked it per the 97+ FSM. I used CMD3 high pressure lubricant between the nut and the spring washer this time, since in the past I've run into an issue where torquing the nut down resulted in metal shards created from the friction between the nut and the washer and going into the bearings. I suppose its possible that the lubricant on the washer and WPC on the threads resulted in the nut being a little bit tighter than Honda intended but I'm not too worried about that, 83lbft isn't much for threads this beefy.

IMG_2571.jpg

Everything seems to spin smoothly and click into place nicely, so time to start on the bell housing and case.
 
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I debated doing it but ultimately decided not to. The REM polishing process knocked down the sharp edges and burs reasonably well so it seemed like a juice not worth the squeeze situation to keep going further, and I didn't trust myself to not slip and gouge something with the dremel.

For a boosted build I think it might be worth it since the 6-speed gears are thinner than the 5 speed, especially around the roots of the gear teeth, but the engine this will be attached to will be N/A.

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really interesting thread so far.

Do you know how much you have spent in parts roughly?

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I was actually expecting worse but adding up the orders it looks like around $9k including the Wavetrac diff which was $2400. With the original 2nd hand diff and Type R bits it would have been closer to $7k.

Speaking of diffs, I was going to try to get the bearing preload set up this weekend, then realized that I forgot to buy any diff shims, and the shims I had left over from my previous transmission work I think I sent them to someone on here but I can't remember who. The speedometer drive ring gear is only available as a part of the diff case, so I had to buy that then use a puller to remove the ring gear and transfer it over to the Wavetrac diff. Putting it on is fairly easy, I just put some CMD3 lubricant on it and slowly went around tapping with a hammer. The diff bearings go on easy enough too, a press is ideal but tapping with a hammer works fine.

IMG_2604.jpg

I did make this handy little 3d printed tool to check the bearing preload though. Having access to a 3D printer is pretty nice, it took less than an hour to model this, then the print itself was an hour or so.

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Edit: I am just now realizing that I won't be able to get the ring gear on without removing the speedo drive.
 
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First Amayama order of stuff I forgot arrived, which contained differential bolts so I can finally button that up. I had to use a 3 arm puller to pop the speedometer drive gear off, install the ring gear, then put it back on. Easy enough, just have to be careful not to crack the speedo drive gear since they tend to be hard and brittle. This thing is substantially heavier than an OEM diff, there goes my weight loss from the ABS system upgrade...

IMG_2650.jpg

I also started sorting out all the various bits and brackets and bolts for the case, such as the oil strainer/cover which I decided to drill and tap for an oil temperature sensor. The lathe makes this easy, just chuck it up and drill. This cap is right at the inlet for the transmission oil pump so should be a good reference point for fluid temperature and I don't have to drill the expensive transmission case either, so win/win.

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Bolting up the reverse lockout, it doesn't protrude into the case so won't block assembly, and it makes my pile of parts smaller. Notice the wiring is basically just crappy plastic loom and tape, we can fix that...

IMG_2656.jpg

I removed the solenoid assembly, stripped off the crappy loom, and rewrapped the wire harness in Raychem DR-25. Necessary? Probably not, but its the little things.

Also, I checked the current draw of this solenoid and found it to be about exactly 1 amp at 14 volts. I'm modifying the ECU code to use the VVIS solenoid control circuit to activate the reverse lockout based on road speed so I don't need a janky external control box, but that solenoid pulls substantially less than 1 amp so to be safe I'll be using a relay to drive it.

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Same treatment applied to the reverse and neutral switches which have similarly crappy wiring.

IMG_2665.jpg

Another small detail is these cast transmission cases have extremely sharp and somewhat jagged edges around the case bolt holes, and its not exactly unheard of for Honda transmission cases to crack through the bolt holes, so a light touch with a chamfer bit (both sides are sharp and jagged!) should significantly reduce the stress risers and chances of cracking when torqued down.

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Chamfered.

IMG_2667.jpg

When I rebuilt my 5 speed (non snap ring range) I opted to replace the snap ring anyways for good measure, and in the process left some benign but ugly scratches in the countershaft bearing bore. I don't want to do that, and it was kind of a pain to get it in too, so I came up with a better method this time. Just a single small zip tie like this lets the snap ring drop into place easily.

IMG_2668.jpg

The last batch of bits should be back from WPC this weekend and then the more interesting assembly steps can finally start, but I'm still waiting on differential shims from Japan so it will be at least another week before its all together for good. I ended up taking both shafts apart again and re-cleaning everything after deciding I hadn't kept them clean enough, then ended up sending all the needle bearings off for treatment as well.

Also, even though I sold this diff to @MaxGeek I figured I'd post the photos in case anyone is interested.

To install the R preload springs I just use a C clamp like this to compress everything enough to seat the snap ring, slightly sketchy but very effective.

IMG_1999.jpg

Here's the diff assembled except for the very last step of putting the top case half back on. I ran all of the parts through the ultrasonic cleaner to get everything as clean as possible before drying with compressed air and oiling, then at assembly liberally added clean Honda MTF to everything as well as soaked the clutch plates in MTF.

IMG_2001.jpg
 
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Does anyone here have a photo of how the wire harness is routed for the reverse lockout solenoid? Specifically the end with the connector? I can't find any good photos or diagrams

Next up, measuring the mainshaft thrust movement. There is a spring washer under the input shaft bearing and it has to be shimmed to a very specific range of movement: 0.14-0.21mm. The way you do this is measure the mainshaft movement with no shims at all, subtract 1.06mm from that to get the low side of the shim thickness, subtract 0.99mm to get the high side, and then select a shim that fits within that range. Then assemble it and use a mainshaft puller tool like the one I made (you can buy one too) to pull on the mainshaft against the spring washer until it won't move anymore and measure the overall movement.

It took me 3 iterations to get it right, the initial number is just an estimate and you have to adjust from there.

IMG_2671.jpg

I got it dialed in at a hair over 0.007 inches, the range converted to inches is 0.0055-0.0083 inches so this seems about perfect to me.

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This oil guide ring thing goes under the diff bearing in the bell housing, it can range from a fairly gnarly press fit to a slip fit depending on how lucky you get with Honda tolerances and mine was pretty tight, so I sanded the outside down with 600 grit until it would just barely slip in. Makes assembly much easier.

IMG_2679.jpg

Needle bearings back from WPC treatment and thoroughly cleaned. I'm not sure what the point of this is but I thought it was worth mentioning. JDM magic I guess/hope, and hoping it will extend the life of these parts that may or may not be available whenever the time comes to rebuild.. The shafts are assembled again and at this point I'm just waiting for the diff shims.

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Various bits underneath the bell housing: input shaft seal, throwing bearing guide, clutch fork pivot, etc.

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More stuff on the case. This is the part I'm unsure about for the reverse lockout wiring, the plug is going to it (and the other wire is going to the temp sensor). Also shown is the T3TEC reproduction of the transmission hanger which looks dang close to OEM down to the plating color. They also sourced tubing from the same company as Honda did.

Turns out I forgot a few bolts and other bits so I'm waiting on those now too...
 
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Now that the last few bits finally arrived from Amayama, the diff can go in and bearing preload can be set.

IMG_2815.jpg

Using the green diff holder tool from before, the preload can be measured with a small beam style torque wrench, a beam or dial wrench is really the only way to do this, a clicker will not give you a good measurement. I found that you only really need to torque the case bolts surrounding the diff to 25ish lbft for quick checks, but when you find a shim that seems to be good I like to go ahead and torque all of them to the factory specified 33lbft for a final check.

I ordered 10 different shims spanning the entire range here to avoid the back and forth of trying one, buying a different one, and checking again a week later when the new one shows up so I could just bang it all out at once. There is 20 different shims in total so I just ordered every other size alternating, they are about $7 each from Japan so not terrible.

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Shafts and forks ready to go in. At first the countershaft wouldn't drop into place so I started worrying I had another mixup with the shaft or ring gear but some more wiggling got it and all was well.

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After the diff, the shafts and forks go in together.

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Then the reverse components and shifter linkage. The reverse shaft assembly on the 6 speed is a little different than the 5 and it makes assembly much easier. The center shaft floats freely rather than having a pin at the bottom, meaning you can slide the shaft up and slide the gears into position, then drop the shaft down into the bore in the bell housing. On the 5 speed the shaft can't slide up like this, meaning the reverse shaft and fork has to go in at the same time as the other shafts. Being able to do the reverse stack and fork afterwards make it much easier with less heavy metal parts to wrangle at once.

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For final assembly of the case halves I just decided to wing it with no dry runs, so I cleaned the flanges one last time with acetone, applied a thin layer of Hondabond HT to the case side flange, and plopped the case on. Questionable and cocky choice to be sure, but seems like the old muscle memory is still there as everything went together smoothly on the first try.

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Once the case bolts were torqued to 33lbft and the snap ring snapped, I checked that each gear was properly selectable. Something to note is that before the detent balls are installed, nothing will feel quite right as the resting position of the shafts will be off. The levers were prone to getting a bit stuck or not feeling quite right. With the detents balls installed though everything shifted perfectly and spins smoothly.

Once everything checked out good I bolted the shifter cable covers on and 3D printed some dust caps that clip onto the oil seal lips since the transmission will probably be sitting for a few months. I didn't want to use the usual caps that slide into the oil seals since these seals come with the inner lip pre-greased so sticking anything in there would disturb the grease, so these that clip onto the outside won't touch it.

Another small detail, the big snap ring cover bolt comes from the factory with some sort of red thread locker/sealer on it. I don't like to use red thread locker on anything ever (except for maybe VVIS screws) so I wire wheeled that stuff off and just added a bit of Hondabond to seal it.

Overall I'm really happy with how everything turned out and hopefully this will be a long lasting and problem free transmission. I have a few points of concern mainly relating to declining manufacturing quality of the components like forks and synchros but not much can be done about that. Like @Honcho mentioned recently Honda is looking like they will start cutting off NSX parts sooner rather than later, so for planning ahead I'll make sure to have spares for the 7 main bearings, bearings, 5 oil seals, forks, countershaft nut/washer, and synchros at least.

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3D printing was an interesting and sort of unexpected addition to this project. Stuff like this is super quick/easy to model and maybe $0.50 worth of PLA filament each, and overall makes the job much easier, and for simple stuff like this there is little to no iteration since I can usually get it right on the first try after spending 15 minutes making a model in Sketchup. I'm not a fan of the way 3D printed parts look and PLA tends to not hold up well when exposed to heat or moisture but for stuff like this it works perfectly.

Purpose-made oil seal installation tools are a game changer, these fit perfectly over the seal lips so you don't risk damaging them, and on the NSX transmission there is no ridge to stop the seals from going in too far so these address that too by bottoming out against the transmission case when the seal is flush. Pretty much just put it over the seal and tap it home with a rubber mallet. Yeah I could just tap them in with a hammer and socket or whatever like I've done for the past 10 years but this is just so much simpler and cleaner, and removes most of the risk of damaging the seals. I actually got this idea from my brother when I ruined a Porsche rear main seal installing it with a hammer in his car...those seals use much thinner metal supports and bend super easily, so apparently the community solution was 3D printing an installation tool that bolts onto the crank snout and perfectly sets the seal depth which was fairly genius. I made a similar tool for doing the axle seals on my E39 M5 differential.

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Anyways that's about it for this. I'm not sure if I'll try to put this transmission in my car now or just wait until my new engine is ready. I figure it would be a roughly 8-10 hour job to swap it, and it would let me break the transmission in and sort out any potential issues separately from trying to break in and tune a new engine so it's an appealing option but the labor to do the swap is unpleasant. My M5 is on jack stands currently since fixing a leaky rear diff snowballed into a full on drivetrain refresh but once that is over with I'll start thinking about this again.
 
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comes from the factory with some sort of red thread locker/sealer on it.
I suspect this is the same schmoo that comes on the "special bolts" for the water pump and oil filter pedestal. I called this out in my TB/WB DIY video series and an engineer from Honda reached out and noted it was what you say here, a combo thread seal/locking compound, however he was clear that it wasn't the same "red" as LocTite or similar, so I suspect it's not as aggressive particularly given they spec it on bolts they know will need to come out again at a maintenance cycle.

(also this thread is amazing)
 
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