swimmingpie: I am surprised that you didn't PM me about this, I am the "inventor" of the window kits and I must say you are the first and only member not 100% satisfied with results so far
First I would suggest you to clean and grease the windows tracks. Then I would verifiy the window alignment. And if you are not satisfied with results...only then you could think of modifying the OEM door wirness/switches
From my experience, the alternator gives you a much better power source than any battery...so direct power to a battery shouldn't be better then turning the key and rev the engine
The wires entering the motor, its thermal switch itself, and all the wirness of the car, including fuses etc...are designed to work with a certain amount of amp loads... feeding it with 18V instead of 12....is never a good idea :biggrin:..and using bigger wires doesn't increase the available amps.
Grease the window tracks and you'll solve your problem, thrust me!