I don't know what the problem is, but you can pull the fuse to stop it. You might have a short somewhere in that system. I thought that the fans' running was contingent upon the ignition being on(?)
My Integra did this as well but only during really hot days. I just assmued it was helping cool the engine because it always went off after a few mins so I never looked into it. But two hours, wow.
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