After exiting and sitting at a red light the noise was louder.
At a red light, are you a press the clutch in rather than shift into neutral person? If so, that contributes to accelerated wear in the throw out bearing. Based upon your comment 'Seemed to only happen when the clutch pedal was pushed in' and 'sitting at a red light the noise was louder' that would be consistent with a worn throw out bearing since that is normally the only time the throw out bearing is doing anything.
The engine died after letting off the gas in 2nd gear. I restarted the can and the noise seemed to go away in in 3rd. Rounding my block the car made a louder noise and died.
The above does not exactly line up with a throw out bearing problem unless the throw out bearing entered some kind of catastrophic failure. Typically , throw out bearings give you some early warning.
Did the transmission become difficult to shift with the engine running? If so, that might be the clutch failing to release completely and could be related to the hydraulics (you definitely have a low reservoir). Check for signs of leakage at the master cylinder and the slave cylinder. If you sit at a red light with the pedal pressed in, a partially released clutch is going to make noise; but, would also typically be accompanied by the fragrance of toasted clutch. If the noise persists with the engine running, the clutch pedal pressed in and the transmission in neutral; but, goes away when you release the clutch I am more inclined to think that something is up with the non hydraulic part of the release mechanism.
I have heard of the case of the clutch damper springs failing on original dual disc clutches. This results in noise when attempting to disengage the clutch and usually the inability to disengage the clutch. With the clutch engaged and the car in gear the car drives more or less normally.
With the car parked / engine off, can you shift the transmission into 1 through 5. First may be initially difficult to get into. If you can shift the transmission at rest it is less likely that you have a transmission problem.
The reality is that the only item that can be addressed without removal of the transmission and the clutch is the clutch hydraulics. If the hydraulics are not obviously leaking and the pedal free play is correct then it is off to the repair shop.